I think that the CNC machine was moving too fast and that is why circles were coming out weird. At least I hope that is the problem, otherwise I didn't tighten everything down correctly or somehow the frame has gotten skewed somehow.
But the cut, instead of taking about 15 minutes, is now going to take a bit over an hour. I may have lowered the speed more than I thought.
After a quick inspection the motors aren't visibly bent, and the belts are certainly looser on one side than on the other. So I am hoping that is the problem. Either way it is a tomorrow jed problem, it is time for today jed to go home and eat.