in the organizer thing:

pokemon alpha sapphire
pokemon y
pokemon sun
pokemon heartgold
pokemon diamond
pokemon platinum
pokemon white
pokemon black 2

pokemon mystery dungeon sky
pokemon super mystery dungeon
pokemon mystery dungeon blue
pokemon mystery dungeon time
pokemon mystery dungeon gates to infinity
pokemon ranger
pokemon ranger shadows of almia
pokemon ranger guardian signs

dragon quest iv
dragon quest v
dragon quest vii
dragon quest viii
dragon quest ix
the alliance alive
mario & luigi bowser's inside story
golden sun dark dawn

final fantasy iii
final fantasy tactics a2
theatrhythm final fantasy
theatrhythm final fantasy: curtain call
final fantasy the 4 heroes of light
bravely default
bravely second
radiant historia

radiant historia perfect chronology
magical starsign
xenoblade chronicles 3d
children of mana
fire emblem shadow dragon
fire emblem awakening
fire emblem fates birthright
fire emblem echoes

ocarina of time 3d
majora's mask 3d
a link between worlds
metroid samus returns
castlevania dawn of sorrow
castlevania portrait of ruin
castlevania order of ecclesia
lunar knights

megaman zero collection
megaman zx
megaman zx advent
megaman battle network 5 double team ds
megaman starforce leo
megaman starforce dragon
megaman starforce 2 zerker x saurian
megaman starforce 3 black ace

super mario 64 ds
new super mario bros
new super mario bros 2
mario kart ds
kirby squeak squad
kirby canvas curse
yoshi's island ds
super smash bros for 3ds

left over:

kingdom hearts 358/2 days
kingdom hearts dream drop distance
kid icarus uprising
professor layton and the curious village
drawn to life
sonic colors
the legend of spyro a new beginning